Henry Pinkard's repositories
VisualInformationTheory
Companion code to paper: "A visual introduction to information theory"
DeepAutofocus
Single-shot autofocus on microscopes using deep learning
mmCoreAndDevices
Micro-Manager's device control layer, written in C++
pycro-manager
Python control of micro-manager for customized data acquisition
AcqEngJ
Java-based acquisition engine for Micro-manager
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
clean-plots
Nice looking matplotlib plots
dryad-app
Codebase for the collaboration of Dryad and Dash data publication and curation services.
latex-goodies
A collection of LaTeX related stuff that I think is worth sharing
LymphoSight
Hardware control, data processing, and machine learning for whole Lymph Node imaging
micro-manager
Microscope control and image acquisition integrated with ImageJ
micro-manager.github.io
Micro-Manager website source
mmpycorex
Python package for unified MMCore access through pymmcore or ZMQ-MMCoreJ + associated utilities
nbsphinx
:ledger: Sphinx source parser for Jupyter notebooks
NDViewer
N-D multichannel multiresolution image viewer for Micro-Manager
notion-sdk-py
The official Notion API client library, but rewritten in Python! (sync + async)
openmv
OpenMV Camera Module
probability
Probabilistic reasoning and statistical analysis in TensorFlow
PyJavaZ
Seamlessly invoke Java methods from Python, whether on the same machine or across a network, with PyJavaZ's high-performance remote procedure call (RPC) protocol
python-gsoc.github.io
Website and ideas page for Python's Google Summer of Code efforts
RemoveGithubNews
Browser extension to remove the GitHub newsfeed
scikit-image
Image processing in Python
scvi-tools
Deep generative models for single-cell omics data