hengbingao's repositories
amethyst_snM
An analysis toolkit for single-cell methylation sequencing data
SCpubr_Rlike_scanpy
Generate high quality, publication ready visualizations for single cell transcriptomics data.
cNMF_elif_removebatch
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
TOBIAS_ATAC_footprint
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
SnapATAC2
Single-cell epigenomics analysis tools
MethSCAn_snMethylation
Python package with CLI for downstream analysis of single cell methylation data.
pytorch_machine-learning
Tensors and Dynamic neural networks in Python with strong GPU acceleration
GLUE_tools
Graph-linked unified embedding for single-cell multi-omics data integration
CellSpace
Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
mouse_brain_transcript
iterative clustering pipeline of big single cell datasets.
LanXuan_scATAC_Rcode
小鼠染色质可及性图谱,使用R进行分析的全套pipelines
mouse_brain_scRNA
Genearlized mapping scripts for RNA-seq and Patch-seq data
cisDynet_bulkATAC_RNAseq
An integrated platform for modeling gene-regulatory dynamics and networks
ATAC-seq
Analysis pipeline for ATAC-seq data
Kaya-ListerLab-Tutorial
Info about how to setup, use and work on UWA's Kaya system. Includes a tutorial with example code
sklearn-doc-zh
:book: [译] scikit-learn(sklearn) 中文文档
cpgtools
Python package to analyze DNA methylation data
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
wmb2023_Hanqing-Liu
Code and data sharing of Liu et al. 2023 manuscript
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
EDTA
Extensive de-novo TE Annotator
GWAS_grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
Taiji_pagerank_GRN_TF
All-in-one analysis pipeline