Hemberg Lab

scRNA.seq.course

Analysis of single cell RNA-seq data course

scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group

SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

scmap

A tool for unsupervised projection of single cell RNA-seq data

scfind

SC3-paper-figures

Scripts to recreate figures from the SC3 paper

D3E

Discrete Distributional Differential Expression

MicroExonator

Snakemake pipeline for microexon discovery and quantification

sc3s

Single Cell Consensus Clustering with Speed

VASAseq_2022

This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022

scmap-shiny

RNA_seq_snakepipes

scfind-paper-figures

Scripts to recreate figures from the scfind paper

scfindME

scfindME adaps scfind to alternative splicing analysis

scmap-paper-figures

Scripts to recreate figures from the scmap paper

FastSC3

A tool for fast unsupervised clustering of very large single cell RNA-Seq data

scASfind

Identification of cell type-specific alternative splicing events using scASfind

scRNA.seq.funcs

R package containing our own functions used in the scRNA.seq.course

scfind-shiny

MPRAnator

A webtool to create DNA sequence variants

nrg-paper-figures

tutorials

yeastDrop-Seq

Computational pipeline to reproduce the results in the paper.

hemberg-lab.github.io

Georgakopoulos_Soares_and_Parada_2022

sctransfermap

prediction of cell type from single-cell data

SnakePool