Hania Kranas's starred repositories
oesophago-gastric-cancer-risk-prediction-ml
Oesophago-gastric cancer risk prediction on EHR data - comparison of a range of ML techniques
sklearn-one-day
One day workshop for machine learning with scikit-learn
breast-cancer-risk-prediction
Breast cancer risk prediction using genotyped data
xMLGenoRisk
Machine Learning approach for genetic risk prediction. I applied a modified, XGBoost algorithm and an iterative SNP selection algorithm to find the top features (SNPs) that best predict the risk of developing prostate cancer with a linear Support Vector Machine (SVM).
viprs-paper
Reproducible code for running the analyses in the paper "Fast and Accurate Bayesian Polygenic Risk Modeling with Variational Inference" (2022)
degas-risk
Polygenic risk modeling with latent trait-related genetic components
ukbiobank-resources
A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
pandasgwas
pandasGWAS: a Python package for easy retrieval of GWAS Catalog data
ukbb_parser
A Python module for loading phenotypic and genetic data from the UK Biobank.
public-apis
A collective list of free APIs
awesome-computational-social-science
A list of awesome resources for Computational Social Science
dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
Deedy-Resume
A one page , two asymmetric column resume template in XeTeX that caters to an undergraduate Computer Science student
Asymmetron
A tool to identify strand asymmetries in genomic data
damage_repair
Genome-wide DNA damage and excision repair maps
papers-we-love
Papers from the computer science community to read and discuss.