Hesham M Abdullah's repositories
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
demo-repo
Demo for Github Intro video.
HABIOTECH
Config files for my GitHub profile.
Data-visualization-for-population-growth
Overpopulation is a real threat to humanity or a potential for development Egypt as a case study. A jupyter notebook for visualizing population growth and the correlation between it and other economic and environmental indicators
tools-metabolomics
Galaxy tools for metabolomics maintained by Workflow4Metabolomics
TCGA_OV_Analysis
Correlational Analysis of Histopathological Images with Proteomics and Transcriptomics Data in Ovarian Cancer
TOUA_Glucosinolate_GWAS
Script repository for Gloss et al. 2021 "Genome-wide association mapping within a single Arabidopsis thaliana population reveals a richer genetic architecture for defensive metabolite diversity"
COVID2019
Analyzing COVID-19 publications and summarizing the publications across topics
HCI011_RNAseq
RNA-seq processed data and analysis code for the paper: FOXM1 is a biomarker of resistance to PI3Kα inhibition in ER+ breast cancer that is detectable using metabolic imaging (Ros et al 2020).
Differentially-Expressed-Genes-Analysis
Making an analysis over the differentially expressed genes, given gene expression data for tumor and normal conditions, about 58 patients.
Capstone_project
Differential gene expression analysis of TCGA dataset containing expression data for normal and kidney cancer cells