habi / zmk-tooth-cohort-method-manuscript

Manubot repository for Tooth-Cohort analysis method. The 'original' version was written with manuscripts.io

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Reviewer1: Clarify use of function

habi opened this issue · comments

Reviewer1 asks us to be mor precise in describing what the functions return.

For example, in the subsection 'Dataset cropping' the text: "... removed small noise by removing small speckles with the remove_small_object function of scikit-image .. ",
what does this function do?
It remove objects smaller than the specified size and connectivity.
But what was the size and connectivity chosen?

Let's go through the code and 'convert' the (meaningful) options of all the functions used to prose.