Gu Zhenhao's repositories
VE401-recitation-class
Interactive Mathematica notebooks illustrating the course content of VE401, Probabilistic Methods in Engineering at UM-SJTU Joint Institute.
CS2040S-tutorials
Tutorial Slides for CS2040S, Data Structures and Algorithms at NUS Computing.
independence-in-streams
This repository contains code for identifying correlation in a stream of samples. The sketching of sketches algorithm and the counter matrix algorithm are implemented and benchmarked.
bucket-map
Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.
approximate-string-matching
A repository of experimental code and benchmark for greedy/dynamic programming approximate string matching algorithms.
kmer-count
Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.
latex-syllabus
Converting the course schedule in the form of CSV into a LaTeX course syllabus.
tc-benchmark
A pipeline for comparing existing taxonomy classification tools.
analytics-zoo
Distributed Tensorflow, Keras and PyTorch on Apache Spark/Flink & Ray
gzhoffie.github.io
Github Pages that stages my current work.
bioinfo-algorithms
Simple implementation of several algorithms in bioinformatics, used for simple execution and testing.
curriculum-vitae
A repository containing my modified version of CV template and content.
deep-learning-with-python-notebooks
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
dna-align-dataset
Guide to download NCBI Bioproject sequencing data and script to generate DNA short read alignment dataset from the data.
my-ubuntu-environment
This contains my notes for setting up an ubuntu (WSL) environment that has several specific functions of my need.
recsim
A Configurable Recommender Systems Simulation Platform
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
sylph
ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.
WFA
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
zoo-tutorials
Tutorials for Analytics Zoo