gyd1990

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anndata2ri

Convert between AnnData and SingleCellExperiment

Language:Python010

Awesome-Linux-Software

A list of awesome applications, software, tools and other materials for Linux distros.

Language:Python010

bioinformatics_study

bioiformatics software study including R python ......

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ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

Language:PythonMIT010

cmapR

R

Language:Jupyter NotebookBSD-3-Clause010

dynverse

dynverse is created to support the development, execution, and benchmarking of trajectory inference methods. 🌌

Language:R010

EmbryoTimecourse2018

Data and analysis scripts for our Embryo Timecourse paper.

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FateID

R package for the inference of cell fate bias from single-cell RNA-seq data.

Language:R010

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics

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gganimate

A Grammar of Animated Graphics

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GTseq-Pipeline

A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.

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HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

Language:PythonNOASSERTION010

NGS_data_processing

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

Language:PerlGPL-3.0010

Noted-bugs-in-analysis-

Some Bugs need to be noted!!!!!

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oneliners

Useful bash one-liners for bioinformatics.

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patchwork

The Composer of ggplots

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PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional single cell data with natural progressions or trajectories.

Language:PythonGPL-2.0010

pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Language:PythonGPL-3.0010

Python-100-Days

Python - 100天从新手到大师

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reticulate

R Interface to Python

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RNA-seq-analysis

RNAseq analysis notes from Ming Tang

Language:PythonMIT000

rosalind

learning bioinformatics and programming through problem solving.

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SAVER

Single-cell RNA-seq Gene Expression Recovery

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scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

Language:PythonBSD-3-Clause010

scGPS

A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data

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scRNA-seq_notes

A list of scRNA-seq analysis tools

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scVI

A deep generative model for gene expression profiles from single-cell RNA sequencing

Language:Jupyter NotebookMIT000

SomeRecords

Some very useful records for me.

Language:RGPL-3.0010

umap

Uniform Manifold Approximation and Projection

Language:PythonBSD-3-Clause000

VISION

A high-throughput and unbiased module for interpreting scRNA-seq data.

Language:RMIT010