guiblanchet / HMSC

Hierarchical modelling of species community

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hmsc.OverPoisson.R model output can't be used with VariPart

javirudolph opened this issue · comments

While using abundance or density data, we use an overdispersad Poisson for hmsc model:
protist_model <- hmsc(protist_hmsc, family = "overPoisson", niter = 10000, nburn = 2000, thin = 5)

Using the "overPoisson" will not give the structural output as a "probit".

The output structure is not correct and will not work with the VariPart()
overPoisson_output