Command line interface?
tseemann opened this issue · comments
Would it be possible to add a command line interface version of this tool?
I think this should be possible using Rscript. Would this suffice? It would still require installing fastbaps using R/conda.
I have added a command line script in 37435c2. It's located in the fastbaps/inst
subdirectory. I will look at updating the conda recipe to put this in the users path. If I get a chance I'll see if I can get it setup in a docker instance as well.
This is now included in the bioconda recipe.
@gtonkinhill thanks so much!
I think optparse
might need to be added to the dependency lists for this
Also v. minor issue if reopening this, phylogeny is misspelled as 'phylogney' in the options
I'd forgotten about this but it should be fixed in the latest release.