griffinp

GWAS_pipeline

Pipelines in progress for GWAS analysis

metabarcodedb

R package for making a metabarcoding reference database

amp_reseq

Backup of amplicon resequencing data processing scripts for use with QIIME

aspp-apac-paper

demonstration repo for ASPP-APAC 2019

code-for-the-world

A tutorial for Advanced Scientific Python Programming on organizing, documenting, and distributing code

deformity-power-analysis

Code and data for power analysis in Gagliardi et al. 2019

des_sel_data

Some data from the Drosophila desiccation selection experiment described in Griffin et al. 2016 (DOI: 10.1534/genetics.116.187104)

desiccation-selection

desiccation selection experiment R scripts

healthhack

melb_sc_bootcamp

Software Carpentry Bootcamp repository

metabarcoding_workflow

R scripts for metabarcoding analysis for invertebrate COI amplicon data

polarbear

Material for Polar Bear population genomics tutorial

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

r-novice-owls

Novice R materials for Software Carpentry Workshops

r-string-calc

R string calculation for Git workshop

R_code_plotting_trees

Some R code for plotting phylogenetic trees

rubra

Infrastructure code to support DNA pipeline

Sel_Line

Bioinformatics pipeline files for processing selected line sequences

variant_calling_pipeline

A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.

vcf-venn

A tool to compare variants contained within multiple vcf format files, to determine common and unique variants to each file. To write these variants to a new file also in vcf format.