granek's repositories
mmlong2-lite
Lightweight workflow for microbial genome recovery
mmlong2
An all-in-one genome-centric metagenomics workflow using long reads
wf-bacterial-genomes
Small variant calling for haploid samples
kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
dorado
A LibTorch Basecaller for Oxford Nanopore Reads
SHOGUN
SHallow shOtGUN profiler
singularity-rstudio-base
Singularity image to serve as base for all project images. Defaults to starting up RStudio with an auto-selected port and password
singularity-rstudio
RStudio Server in a Singularity container
raspi-sump
A sump pump monitoring system using Python and Raspberry Pi
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
adv-r-book-solutions
Solutions for the Advanced R Development book
OrthoMCL-docker
An OrthoMCL setup in a docker image
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
fastqident
Guess the quality encoding system used by FASTQ sequence files.