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gpertea / gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

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converted gtf file is empty

sumitra20 opened this issue · comments

commented

Hi,

I have a .gff file that was obtained from prokka. Converting the gff file into gtf format gives me file with no output. Im not sure if im going wrong somewhere. Any help will be appreciated. I'll attach the content of my gff file in txt format

gffread ./b.mega_hybrid.gff -T -o sequence.gtf

gff_file.txt

commented

Seems to work when I test that file here, I suspect you are using a rather old version of gffread? What does gffread --version say (if that option even works for that old version)?