Failure to convert gene and child CDSes to exons with parent mRNAs which are children of gene
hermidalc opened this issue · comments
Leandro Hermida commented
The following gene features fail to get converted to two mRNAs with child exons. I know this looks like a weird edge case, but it's an NCBI genome GFF, and maybe worth handling properly by gffread
AP005154.1 DDBJ gene 42789 43484 . - . ID=gene-cI;Name=cI;gbkey=Gene;gene=cI;gene_biotype=protein_coding
AP005154.1 DDBJ CDS 42789 43484 . - 0 ID=cds-BAC78103.1;Parent=gene-cI;Dbxref=NCBI_GP:BAC78103.1;Name=BAC78103.1;Note=ORF c64%3B~similar to phage lambda CI;gbkey=CDS;gene=cI;product=CI protein;protein_id=BAC78103.1;transl_table=11
AP005154.1 DDBJ CDS 43109 43354 . - 0 ID=cds-BAC78104.1;Parent=gene-cI;Dbxref=NCBI_GP:BAC78104.1;Name=BAC78104.1;Note=ORF c65;gbkey=CDS;gene=cI;product=hypothetical protein;protein_id=BAC78104.1;transl_table=11