gpertea / gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

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Error in `gffread': double free or corruption (!prev): 0x000055b181794a50 ***

Biscuite-wzy opened this issue · comments

Hello,
I am using gffread (v0.12.7) to extract cds sequences based on a gff file. When I run the command "gffread Atum.gff3 -g Atum_genome.fa -x cds.fa”, I met a error, as follows. I do not know the reason. Can you help me? Thanks a lot.

gffread Atum.gff3 -g Atum_genome.fa -x cds.fa
FASTA index file Atum_genome.fa.fai created.
*** Error in `gffread': double free or corruption (!prev): 0x000055b181794a50 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81489)[0x7fbf7d516489]
gffread(+0x28a4d)[0x55b17fdc4a4d]
gffread(+0x29e4a)[0x55b17fdc5e4a]
gffread(+0x2e4ad)[0x55b17fdca4ad]
gffread(+0x4333)[0x55b17fda0333]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7fbf7d4b73d5]
gffread(+0x58c5)[0x55b17fda18c5]
======= Memory map: ========
55b17fd9c000-55b17fd9f000 r--p 00000000 fd:02 3487422421 /home/ly/miniconda3/envs/gffread/bin/gffread
55b17fd9f000-55b17fdd0000 r-xp 00003000 fd:02 3487422421 /home/ly/miniconda3/envs/gffread/bin/gffread
..............