Incorrect `DISTPREV` after chr 1 in VCF data
sehilyi opened this issue · comments
SEHI L'YI commented
{
"tracks":[
{
"id":"SRR7890905-mid-mutation",
"title":"Point Mutation",
"style":{
"background":"#FFFFFF",
"inlineLegend":true
},
"data":{
"type":"vcf",
"url":"https://somatic-browser-test.s3.amazonaws.com/SNV_test_tumor_normal_with_panel.vcf.gz",
"indexUrl":"https://somatic-browser-test.s3.amazonaws.com/SNV_test_tumor_normal_with_panel.vcf.gz.tbi",
"sampleLength":500
},
"dataTransform":[
{
"field":"DISTPREV",
"type":"filter",
"oneOf":[
0
],
"not":true
}
],
"mark":"point",
"x":{
"field":"POS",
"type":"genomic"
},
"color":{
"field":"SUBTYPE",
"type":"nominal",
"legend":true,
"domain":[
"C>A",
"C>G",
"C>T",
"T>A",
"T>C",
"T>G"
]
},
"y":{
"field":"DISTPREVLOGE",
"type":"quantitative",
"axis":"left",
"range":[
10,
50
]
},
"opacity":{
"value":0.9
},
"tooltip":[
{
"field":"DISTPREV",
"type":"nominal",
"format":"s1",
"alt":"Distance To Previous Mutation (BP)"
},
{
"field":"POS",
"type":"genomic"
},
{
"field":"SUBTYPE",
"type":"nominal"
}
],
"width":680,
"height":60
}
]
}