Goodwright's repositories
nextflow.py
Python wrapper around Nextflow.
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
flow-nf
Reusable modules used in Flow
flowbio
A python library for interacting with the Flow API
nfcore-wrappers
Contains wrapper pipelines around nf-core modules
scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
flow-demultiplex
The Demultiplex pipeline used in Flow, using Ultraplex.
multi-package-containers
Testing building mulled containers for multi-requirement tools.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
smrnaseq
A small-RNA sequencing analysis pipeline
tools
Python package with helper tools for the nf-core community.
ultraplex
Ultra-fast 5' and 3' demultiplexer