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KR's starred repositories

RNA-seq

Step-by-step analysis pipeline for RNA-seq data

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Machine-Learning-with-R-datasets

Formatted datasets for Machine Learning With R by Brett Lantz

57100

HCP_2024

Language:Jupyter NotebookBSD-2-Clause200

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

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BatchQC

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

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bulk-rnaseq-analysis

A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.

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LLM101n

LLM101n: Let's build a Storyteller

2558000

IsoformSwitchAnalyzeR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

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Visium_SPG_AD

Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.

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template_project

Template project following the guidelines from https://lcolladotor.github.io/bioc_team_ds/organizing-your-work.html#.YzL43uzMKX0

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modern-bayes

Modern Bayesian statistics, STA 360/602, Duke University, Department of Statistical Science

NOASSERTION100

cactus

Chromatin ACcessibility and Transcriptomics Unifying Software

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minimal_nextflow_samplesheet_example

A minimal RNAseq workflow, written in Nextflow, an example of using a samplesheet for metadata.

Language:NextflowMIT600

stat_rethinking_2022

Statistical Rethinking course winter 2022

100

"ltc_palettes: Tailored for data visualization enthusiasts, ltc_palettes is an R package that offers a curated collection of color palettes. Crafted to enhance clarity and impact, these palettes ensure that your visual representations not only communicate data effectively but also aesthetically

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