Jorrit Boekel's repositories
nf-core-dda-quant-proteomics
Quant proteomics as practiced at Lehtiö lab for NF-core
nf-core-lfquandenser
A proteomics pipeline for labelfree analysis using quandenser and triqler
305ftw
Garmin forerunner 305 -> Livelox
bioconda-recipes
Conda recipes for the bioconda channel.
celery-windows-pwiz
Celery tasks for mzML conversion on windows platform
DEqMS
DEqMS is a tool for quantitative proteomic analysis
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nf-core-labelcheck
Proteomics nextflow labelcheck pipeline with report
orientalyst
Plotting and analyzing orienteering data
percolator
Semi-supervised learning for peptide identification from shotgun proteomics datasets
protein-quant
Lina Hultin-Rosenbergs (weighted) protein quant analysis tools, adapted to suit running in Galaxy framework
proteomics-infrastructure-scripts
Some misc scripts that govern data transfer, etc. at the clin.prot mass spec facility at Scilifelab
proteomics_configuration
Configuration management for a small Galaxy cluster
proteomics_deployment
Deploy scripts for Scilifelab proteomics facility
SpectrumAI
R script to automatically inspect MS2 spectra of single-subsititution peptide identifications
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tools
Python package with helper tools for the nf-core community.