Dependency conflicts
joewandy opened this issue · comments
Only in keqingw branch:
The Pipfile in this branch is a bit broken.
- Clustergrammer only works with pandas up to 0.25 since it uses .ix, which is deprecated in later versions.
- mofax needs pandas >= 1.0.0
Solution would be to update clustergrammer codes to not use .ix.
Until we do that, the heatmap using clustergrammer isn't going to work I think
The fix above (switching from .ix) has been discussed here: MaayanLab/clustergrammer-py#16, and performed in this branch: https://github.com/MaayanLab/clustergrammer-py/tree/patch.
As a temporary fix, we use the patch branch too: e729dae.
Long term, it's best to switch to clustergrammer2 which doesn't have this problem.
Can temporarily closed for now