gitter-lab / ssps

Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

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SSPS output format

dpmerrell opened this issue · comments

For one-off SSPS runs: need to convert output JSONs to a tab-delimited file -- one row for each edge.

e.g.,
node1 (tab) node2 (tab) score

That is the format that GENIE3 and other bioinformatics methods use, so it is a good choice for SSPS. I'm assuming that node1 is the parent node and node2 is the child node.

Should be fixed on master ✔️