Gloria Iriarte's repositories
Bioinformatics-Training
Bioinformatics training resources
CFF
Cluster-free Filtering. Determine which sequences are real in a metagenomic sample.
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
dada2_to_qiime
Convert DADA2 seqtabs to QIIME files
funannotate
Eukaryotic Genome Annotation Pipeline
Fungal_genome_annotation
General and specific recipes used for genome annotation of different fungal genomes
Fv_C-variants
Detection SNPs leading to branching variants of Fv
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
rubi-gbs
Genotyping by sequencing (GBS) analysis of P. rubi and P. fragaraie.
swarm
A robust and fast clustering method for amplicon-based studies
vsearch
Versatile open-source tool for metagenomics