ExtData reading error
TianYangMY opened this issue · comments
Name and Institution (Required)
Name:Shuai Li
Institution:SUN YAT-SEN UNIVERSITY
Description of your issue or question
When I run GCHP, the GC.log doesn't give a reason for the error, but then the allPE .log shows the following error
CAP.EXTDATA: ERROR: UpdateBracketTime: Could not find data within maximum offset range from ./HcoDir/OFFLINE_BIOVOC/v2021-12/0.5x0.625/%y4/%m2/biovoc_05.%y4%m2%d2.nc，
Strangely, I didn't turn on the option to use OFFLINE_BIOVOC in the HEMCO_Config.rc file, and I'd like to know why that is! @lizziel
Please provide as much detail as possible. Always include the GCHP version number and any relevant configuration and log files.
GCHP 14.2.3
GCC 10.2.0
openmpi 4.1.1
esmf 8.4.2
ENV_GCHP.txt
slurm-7623323.out.txt
allPEs.log.txt
GC.log.txt
DefaultCollection.rcx.txt
logfile.000000.out.txt
Thanks for reporting this. Could you also provide your ExtData.rc and HEMCO_Config.rc config files? I am curious to see the settings.
Sorry to reply you so late because of the time difference. Provide you with ExtData.rc and HEMCO_Config.rc. @lizziel
ExtData.rc.txt
HEMCO_Config.rc.txt
Hi @TianYangMY, could try posting your ExtData.rc file again? It am not able to open it. Also try commenting out the offline biogenic VOCs section of ExtData.rc, run again, and see what new error you get.
I comment out the offline biogenic VOCs section of ExtData.rc, but it stop the same process......
allPEs.log.txt
DefaultCollection.rcx.txt
ExtData.rc.txt
GC.log.txt
HEMCO_Config.rc.txt
logfile.000000.out.txt
slurm-7630167.out.txt
Hi @TianYangMY, the error in the log file is this, which appears here in the code:
pe=00003 FAIL at line=00803 ExtDataGridCompMod.F90 <Found 146 unfulfilled imports in extdata>
The next step is to figure out what those 146 unfulfilled imports are. If the error handling is correct then this message means 146 entries in ExtData.rc were not found.
The allPEs.log file unfortunately does not contain any useful information. You will need to enable MAPL and ExtData debug prints to get information printed there. To do this you can set the following to DEBUG in config file logging.yml.
loggers:
# ... etc not shown ...
MAPL:
handlers: [mpi_shared]
level: WARNING
root_level: INFO <=== Change this to DEBUG
CAP.EXTDATA:
handlers: [mpi_shared]
level: WARNING
root_level: INFO <=== Change this to DEBUG
After doing this and rerunning (no need to recompile) you should see more details information in ExtData.rc, such as shown in similar GCHP github issue #384.
Hi @TianYangMY, were you able to resolve this issue?
Sorry, I've been busy with other things lately, these are the new output files, there seems to be a problem with importing the files, but I do have them.
allPEs.log.txt
DefaultCollection.rcx.txt
GC.log.txt
hostlist.txt
logfile.000000.out.txt
slurm-7862811.out.txt
Hi @TianYangMY, could you post your ExtData.rc file? That is the most relevant configuration file for import files.
I am closing this issue due to inactivity. @TianYangMY, feel free to reopen if you are still having problems.