genomic-medicine-sweden / meta-vis

Visualisation of metagenomic analysis results

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[User Story] Metadata table

pbiology opened this issue · comments

Need

As a clinician I want a table which contains all the metadata for the sample I'm looking at, so I can easily understand where the data came from.

Suggested approach

Create a endpoint in the backend which at least has the following sample metadata:

  • sample source
  • batch
  • ticket/order number
  • Priority
  • Accreditation status
  • Library prep
  • qPCR CT values
  • wet-lab methods
  • reads assigned to viruses

Can be closed when

  • An endpoint with metadata exists
  • The frontend showing this data

Blockers

No response

Anything else?

One should think about, and get feedback from the clinicians on, what info should be most readily available.
As described now it's a bit all over the place.