genome / pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

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Build error with gcc 6, 7

jgarthur opened this issue · comments

On newer versions of gcc, the build fails due to error: call of overloaded ‘abs(unsigned int)’ is ambiguous

Please see below for a full log:

pindel-error.txt