Pindel does not use all assigned CPUs

Question

Pindel does not use all assigned CPUs

Madelinehazel opened this issue 7 years ago · comments

Hello,

I am trying to run Pindel with multithreading option --number_of_threads 24. However, Pindel only seems to use on average 6 processors, even though 24 are available. How can this be resolved?

Thank you,
Madeline

Kai Ye · Answer 1 · Tue Sep 26 2017 07:25:10 GMT+0800 (China Standard Time)

Part of the code in reading and sorting is not multi-threaded. Better cut the genome into pieces using -c Chris:start-end, then use 4 threads per region Hello, I am trying to run Pindel with multithreading option --number_of_threads 24. However, Pindel only seems to use on average 6 processors, even though 24 are available. How can this be resolved? Thank you, Madeline — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#72>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AB9s-8-p4DEkvSIAPb71DKWdOj5AWpT8ks5sl9rIgaJpZM4PjCLf>.