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genome / pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

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INSTALL - option to statically link htslib

keiranmraine opened this issue · comments

commented

Useful to be able to build the binary and then remove htslib. Normally possible to do this by just removing htslib/libhts.so* before compiling dependent tools but doesn't seem to work for pindel.

commented

Hmm, master builds but tagged releases don't, highly recommend a new release is made so that it can be used in production environments.

commented

Hi Keiran,

to check whether I understand things correctly: the current master functions well in this respect, but the latest release (Dec 10, 2015) does not work. So you propose that we create a new release using the current master?

Eric-Wubbo