Giters

genome / pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Multiple samples

mingfang618 opened this issue · comments

commented

Dear Kai,

I have a question about the running with multiple samples. I found the memary usage was increased with sample numbers increased in configuration file, so I plan to input small number of samples in configuration file per run. I am wondering if the results by inputing multiple samples and single/few sample(s) will be different with pindel.

Thanks,
MIng Fang

commented

I just run and it was different

commented

So, how should we proceed? Do a batch of 10 samples or do all the 100 samples together?