Giters

genome / pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

How does pindel detect large insert

liufy11 opened this issue · comments

commented

pindel can detect big insert when -l added. As we know, pindel is based on RP and SR signal , RP can detect insert shorter than library size and SR can only detect insert shorten than read length,
so How does pindel detect big insert ?