Geng Lee's repositories
Global_Search
Code repository for the Coral Global Search project.
base-editor-design-tool
This tool designs guides for use with the base editor technology.
blog
seqyuan
Breat-Cancer-Screening-Classification-and-evaluation-using-Confusion-Matrix
This project was made for a client on PeoplePerHour. The data involves screening different columns and then plotting out confusion matrices using the Seaborn Library and HeatMaps. The True positives, False positives, True negatives, False negatives are calculated and then used to calculate specificity and sensitivity.
CRISPR_Library_prep
Script(s) and associated files for CRISPR guide RNA generation
DANGER_analysis
Risk-averse on/off-target assessment for CRISPR editing without reference genome.
demucs
Code for the paper Hybrid Spectrogram and Waveform Source Separation
Detachment-Limted-Landscape-Evolution-Model
Well-commented Python code for efficient and accurate solutions of the minimalist landscape evolution model (LEM) in detachment-limited conditions.
esm-1v-workflow
Workflow and supporting code for evaluating every amino acid human protein substitution using ESM-1v.
exosomePurity
tumour purity deconvolution in serum exosomes based on miRNA signatures
freeCodeCamp
freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.
jannovar
Annotation of VCF variants with functional impact and from databases (executable+library)
LASER
Long-reads-based Alternative Splicing Estimation and Recognition
p53-prime-editing-sensor
Code for analysis of p53 prime editing sensor screening data
protein_analyzer
这个脚本提供了基于蛋白质序列的 CDS序列长度，protein长度，蛋白质分子量，蛋白质等电点，蛋白质脂族指数，蛋白质清水性，蛋白质不稳定指数，蛋白质分子式等所有蛋白质性质的批量计算
pysashimi
Pure python scripts to make sashimi plots
scDNAm
Single-cell DNA methylation analysis for "Nature of epigenetic aging from a single-cell perspective"
sciCSR
Single-Cell Inference of Class Switch Recombination
scrna-recom
collected resource for scRNA-seq analysis
sequence_unet
Fully convolutional deep learning variant effect predictor architecture
trackplot
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
training-material
A collection of Galaxy-related training material
video_spider
短视频去水印：抖音,皮皮虾,火山,微视,微博,绿洲,最右,轻视频,快手,全民小视频,巴塞电影,陌陌,Before避风,开眼,Vue Vlog 小咖秀,皮皮搞笑,全民K歌,西瓜视频,逗拍,虎牙,6间房,梨视频,新片场,acfun,美拍...
wgs_variant_analysis_RBM20
Whole genome sequencing analysis to investigate on- and off-target effects of CRISPR base-editor treatment in mice.