GeneticResources

GWASpy

nps

Non-Parametric Shrinkage (NPS)

pyprobml

Python code for "Probabilistic Machine learning" book by Kevin Murphy

AD_finemap

Code supporting analyses in paper on fine-mapping AD loci

anndata

Annotated data.

bGWAS

R package to perform Bayesian Genome-Wide Association Studies

fastenloc

Colocalization analysis of genetic association signals

Giotto

Single-cell spatial analysis toolbox

gnomad_qc

gwasglue

Linking GWAS data to analytical tools in R

MAST

Tools and methods for analysis of single cell assay data in R

metaboprep

a pipeline of metabolomics data processing and quality control

MVMR

MVMR R Package

ncem

Learning cell communication from spatial graphs of cells

picopili

Fork of ricopili for development of pipeline for family-based data

pleio

polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

regexcite

PACKAGE EXISTS FOR DEMONSTRATION PURPOSES ONLY! Make Regular Expressions More Exciting

rlang

Low-level API for programming with R

RNA-SEQ

seurat-object

signac

R toolkit for the analysis of single-cell chromatin data

SingleCellExperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

skimr

A frictionless, pipeable approach to dealing with summary statistics

slideseq-tools

Tools for analyzing Slide-seq data

SPACox

GWAS for survival analysis in large cohorts

SpatialExperiment

squidpy

Spatial Single Cell Analysis in Python

Tangram

Spatial alignment of single cell transcriptomic data.