Resolve automated test failures

[Janet Davis]

Many of the tests in the automated test suite currently fail. These tests should either be brought up to date with the current code, or deleted for now, to be re-implemented when the components under test are next improved.

Here is the summary output as of today:

tests/test_document.py ..............                                                                                              [ 22%]
tests/test_effort_detector.py F.                                                                                                   [ 26%]
tests/test_flags.py ..                                                                                                             [ 29%]
tests/test_main_script.py ....FFFFFF................                                                                               [ 72%]
tests/test_personal_life.py FF                                                                                                     [ 75%]
tests/test_publication_detector.py .....                                                                                           [ 83%]
tests/test_report.py FF....FF.                                                                                                     [ 98%]
tests/test_sanity.py .                                                                                                             [100%]

[Jordan Matelsky]

Fixed in #84!