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BIOL7800 Assignment 14

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Task 1

There are 2 chapters of Darwin's Origin of Species in this repository within a directory entitled task1-files. Write a program that uses argparse and glob to open and read these chapters and some other code to get a list of all words in each chapter. Then output, to the command line, a pretty-printed list of the following:

  • the total count of words in Chapter 1
  • the count of unique words in Chapter 1
  • the total count of words in Chapter 2
  • the count of unique words in Chapter 2
  • the count of words in Chapter 1 that ARE in Chapter 2
  • the count of words in Chapter 1 that ARE NOT in Chapter 2
  • the count of words in Chapter 2 that ARE NOT in Chapter 1

Your program should contain a main loop and an ifmain statement, it should be formatted correctly, and you should be sure to use argparse to argparse and glob to read in the chapter files.

Task 2

In the directory task2-files, there are a lot of files. Write a program that uses argparse, glob, and os to copy only the fastq files to a new directory. Your program should contain a main loop and an ifmain statement, it should be formatted correctly, and you should take both the input directory containing the files you want to copy and the output directory where you will copy the files as arguments on the command-line.

Task 3

In the directory task3-files there are 10 files, each containing a random selection of integer values. Using a combination of argparse and glob, read these files. Then, use map to compute the sum of all integer values across all files. Your program should contain a main loop and an ifmain statement, and it should be formatted correctly.

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BIOL7800 Assignment 14


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