George Bouras's starred repositories
Polypolish
a short-read polishing tool for long-read assemblies
AllTheBacteria
Follow up to Grace Blackwell's 661k dataset, for 2023
MicrobeMod
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
Metagenomic-DeepFRI
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
aaanalysis
Python framework for interpretable protein prediction
pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
staph_adaptation_paper
Scripts to analyse within-host evolution during S. aureus colonisation and infection
metagenomic_binning_review
Code used to analyse and plot metadata of metagenomic binning tools