Gaura

alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

appliedgenomics2019

Materials for Spring 2019 Applied Genomics Course

bioSeqGen

An R package to generate reads an anlyse associated data

cgr3d

Chaos Game Representation 3D

datasciencecoursera

EN601.648ComputationalGenomicsDataAnalysis

ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

ggplot2

An implementation of the Grammar of Graphics in R

kallistobustools

kallisto|bustools workflow for pre-processing single-cell RNA-seq data

linuxTools

Workign with linux tools

LoveIt

❤️A clean, elegant but advanced blog theme for Hugo 一个简洁、优雅且高效的 Hugo 主题

mlflow

Open source platform for the machine learning lifecycle

mouseIndexForVelocity

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

projectR

python-cheatsheet

Basic Cheat Sheet for Python (PDF, Markdown and Jupyter Notebook)

referencePython

Noteworthy points that will help in understanding python

referenceR

Repository to store R commands that I like, things that I would like to remember

RNAvelocity

Work related to RNA velocity

roxygen2

Generate R package documentation from inline R comments

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

svtools

Tools for processing and analyzing structural variants.

TDI

Project Proposal for TDI

testRepo2

test repository for github pages

TestWebpage

variantEffects

Generating automated summary of the effects of single nucleotide variants in EBV sequencing reads

Visualization-Hackathon

Visualization Hackathon