gardner-lab

FinchScope

Single photon tools for Neuroscience

find-audio

Dynamic time warping for audio matching and alignment

syllable-detector-swift

Using Core Audio to perform STFT and pass the amplitude data into a Matlab trained neural network.

multi-channel-tweetynet

Automated annotation of bird song with multi-channel time-frequency input

implant-histology-analysis

MATLAB interface for annotating histology images of implants and calculating basic statistics.

labpy

Utility python scripts people in the Gardner Lab use to speed up their workflow

syllable-detector-learn

Matlab offline learner for the neural network syllable detector

video-capture

Capture and control from the miniature microscopes for near real time analysis.

acontour

Library for computing auditory contours

acontrast

Tools for computing acoustic contrast using auditory contours and amplitude envelope

lab-operations

Code and information that is useful for day-to-day lab operations.

printimage

bird-monitoring

Software for monitoring the evironment in bird boxes

Calcium

Shared calcium imaging code

Data-modeling

Here we keep useful data modeling code

HVC-Stability-Analysis

Analysis code for the Manuscript 'Unstable Neurons support a stable behavior'

intan-frontend

intan_frontend

nyedack

MATLAB based National Instruments acquisition toolbox

nyedack-s

Session-based NiDAQ acquisition in MATLAB

OperationSleepCode

SM_SeepCode

Archived code- original edit

spikoclust

SPIKOsaurus CLUST: A MATLAB toolbox for split-and-merge-expectation-maximization-based spike sorting

syllable-detector-matlab

MATLAB-based neural network detector.

syllable-detector-runtime-labview

LabVIEW runtime of Ben's syllable detector

uo-printimage

UO printimage copy

visualTools

zftftb

The [Z]ebra [F]inch [T]ime [F]requency [T]ool[b]ox