Giters
galaxyproject
/
usegalaxy-playbook
Ansible Playbook for usegalaxy.org
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Stargazers:
30
Watchers:
25
Issues:
305
Forks:
24
galaxyproject/usegalaxy-playbook Issues
NCBI fasterq_dump tool + fastq_dump fail at usegalaxy.org and usegalaxy.eu
Closed
3 years ago
Comments count
14
Create Busco indexes for usegalaxy.org
Updated
4 years ago
Genbank to GFF3 converter (Galaxy Version 1.0) dependency issue
Updated
4 years ago
Roary 3.13.0 fails at usegalaxy.org -- likely installation issue
Closed
3 years ago
Comments count
14
RNA STAR version 2.7.2b does not find natively indexed reference genomes
Closed
4 years ago
Comments count
2
MAF tools do not find indexed hg19 46-way or 100-way. CVMFS path problem?
Updated
4 years ago
Comments count
3
Dependencies issues for text manipulation tools at https://usegalaxy.org
Closed
4 years ago
Comments count
1
GALAXY_VIRTUAL_ENV python 2 destination for legacy tools
Closed
4 years ago
Comments count
10
All mapping jobs failing at Jetstream at usegalaxy.org
Closed
4 years ago
Comments count
1
Extract Genomic DNA versions 3.x+ do not link with built-in genome indexes
Updated
2 years ago
Comments count
11
Update "Tabular-to-Fasta" from v1.1.0 to v1.1.1 to capture Py3 fixes
Closed
4 years ago
Comments count
2
Annovar -- complete fixup for Py3 on Main
Closed
2 years ago
Comments count
1
Snippy has a samtools version dependency conflict - Main only
Closed
4 years ago
Comments count
8
"Apply Rule to Collection" -- py3 related?
Updated
4 years ago
Comments count
3
GATK 1.4 tools -- updated all after MTS is updated to run these in a Py2 env
Closed
4 years ago
Comments count
3
Re-test aachanges tool once change are made and applied to Main (current status: is in galaxy, not MTS)
Updated
4 years ago
Retest tools once NCBI's `tbl2asn` binary issues resolved and on main
Closed
3 years ago
Comments count
6
Trackster visualizations: no additional datasets can be added to existing
Closed
2 years ago
process updating MTS is broken
Closed
4 years ago
Comments count
1
Please add DADA2-formatted reference databases to test/main
Updated
4 years ago
Comments count
12
Add "graphicsmagick" tools to Main
Updated
5 years ago
Remove "EBI SRA" tool until it is functional again?
Closed
5 years ago
Update Bamtools once MTS updated
Closed
10 months ago
Comments count
2
RNA-Star 2.6.0b does not lists out indexed genomes on the tool form at usegalaxy.org
Closed
4 years ago
Comments count
5
Update "Download and Extract Reads in X format from NCBI SRA" tools
Closed
5 years ago
Comments count
3
wipe mako template cache on Galaxy deployment
Updated
4 years ago
Comments count
3
run jobs in singularity containers
Closed
10 months ago
Comments count
3
Tool install/update request: Add and update DEXSeq tools
Updated
5 years ago
Tophat not working
Closed
5 years ago
Comments count
1
Summary with ongoing status for quota recalculation issues at usegalaxy.org
Closed
5 years ago
Comments count
7
Genomespace ending on 11/15 -- updates to Main & communications
Closed
4 years ago
Comments count
5
Mapping jobs failing on Jetstream cluster
Closed
5 years ago
Comments count
4
CVMFS datatypes_conf.xml mismatch bcf_to_bcf_bgzip_converter.xml
Updated
5 years ago
Comments count
4
Prokka v 1.13 requires tbl2asn to be updated at main
Closed
5 years ago
Comments count
3
Update Fastq Groomer (updated tests + functionality) once ready in MTS
Updated
5 years ago
Comments count
2
Upgrade Seqtk tools to latest version once updated in MTS
Updated
5 years ago
Consider adding Bismark tool suite to Main https://usegalaxy.org
Updated
5 years ago
cache big and almost static API endpoints in nginx
Updated
5 years ago
Comments count
5
Add InterMine <-- Galaxy exchange creator Tool
Updated
5 years ago
Run new Kraken2 DM and test it out with tools
Closed
3 years ago
Add Kraken2 tools and new DM to Test server
Closed
3 years ago
Comments count
2
Every filter tool that includes a "genome regions" input could be made more user friendly
Updated
5 years ago
Comments count
7
Parse Training feedback out into action items -- 2 of N
Updated
5 years ago
Parse Training feedback out into action items -- 1 of N
Updated
5 years ago
Increase memory and create a dynamic rule for seqtk_sample
Updated
5 years ago
Comments count
4
Add "Volcano Plot" to main (is at EU and included in GTN tutorials)
Updated
5 years ago
Comments count
2
Standardize the use of Interlaced versus Interleaved (fastq) across tools, help, GUI
Updated
5 years ago
Comments count
1
Update EdgeR on main to 3.24.1 (most current changeset)
Updated
5 years ago
Comments count
3
Update Limma-voom on main to 3.38.3+galaxy2
Updated
5 years ago
Fix VCFFilter help section rendering in GUI
Closed
5 years ago
Comments count
2
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