Gagneur lab

gagneurlab

To understand the genetic basis of gene regulation and its implication in diseases.

www.gagneurlab.in.tum.de

Gagneur lab's repositories

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Language:PythonMIT128 14 332

OUTRIDER

OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

Language:RMIT47 12 34

MMSplice_MTSplice

Tissue-specific variant effect predictions on splicing

Language:Jupyter NotebookMIT39 8 45

FRASER

FRASER - Find RAre Splicing Events in RNA-seq

Language:RMIT35 6 47

concise

Concise: Keras extension for regulatory genomics

Language:Jupyter NotebookMIT32 7 6

absplice

Language:Python31 7 16

splicemap

Language:Jupyter Notebook16 4 4

FRASER-old-gagneurlab

Language:RMIT13 50

SpeciesLM

Language:Jupyter NotebookMIT10 5 3

spectralis

Language:Python7 4 4

OCR-Stats

Language:R5 6 1

wBuild

R project report builder

Language:Python4 5 17

AbSplice_analysis

Language:Python3 30

gene-embedding

Language:Jupyter NotebookMIT2 30

gfeat

Python genomic features extractor from raw files

Language:PythonMIT2 30

Leukemia_outlier

Language:R2 40

py_outrider

py_outrider: a generalized framework for context-dependent outlier detection in omics data

Language:PythonMIT2 4 3

AbExp

Language:PythonMIT1 30

Cellular_energy_codon_analysis

Code for the data processing and analyses present on the manuscript: "Cellular energy regulates mRNA translation and degradation in a codon-specific manner".

Language:Jupyter Notebook1 30

dataviz

Data Analysis and Visualization in R

Language:HTML1 40

drop_demo_data

030

snakemake-slurm-template

Language:PythonMIT040

abexp-ukbb-prs

Language:PythonMIT030

abexp-ukbb-trait-analysis

UK Biobank trait analysis with AbExp scores

Language:PythonMIT030

abexp-ukbb-variant-clumping

Language:Jupyter NotebookMIT030

FRASER-2.0-analysis

This repository contains the analysis code for the FRASER 2.0 manuscript.

Language:RMIT03 2

gnomad_rocksdb

Language:Python010

rep

RNA expression prediction

Language:PythonMIT030

spliceai_rocksdb

Language:Python04 1

transmicron

Language:RMIT04 1