futianfan

BioChemGNN

CV

Personal CV

Intel-TSX-test-suite

A suite of simple programs to test Intels' TSX extension

LLParser

A light-weight LLVM assembly parser

CGCF-ConfGen

:test_tube: Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)

CPL_attack

atom3d

ATOM3D: tasks on molecules in three dimensions

pyscreener

pythonic interface to virtual screening software

RetroXpert

TDC

Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

QuantumSpeech-QCNN

IEEE ICASSP 21 - Quantum Convolution Neural Networks for Speech Processing and Automatic Speech Recognition

clinicalBERT

repository for Publicly Available Clinical BERT Embeddings

molds

A collection of molecule datasets for benchmarking machine learning methods.

CardioLearn

CardioLearn: A Cloud Deep Learning Service for Cardiac Disease Detection from Electrocardiogram (WWW 2020 Demo)

DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

TASTE

Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"

Pytorch-Tensor-Train-Network

Jun and Huck's PyTorch-Tensor-Train Network Toolbox

texar-pytorch

Integrating the Best of TF into PyTorch, for Machine Learning, Natural Language Processing, and Text Generation. This is part of the CASL project: http://casl-project.ai/

snorkel

A system for quickly generating training data with weak supervision

Process-Data-of-CNN-DailyMail

This repository holds the output of the repository: https://github.com/abisee/cnn-dailymail

iclr19-graph2graph

Learning Multimodal Graph-to-Graph Translation for Molecular Optimization (ICLR 2019)

BertSum

Code for paper Fine-tune BERT for Extractive Summarization

moses

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

icml18-jtnn

Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)

graphnn

Training computational graph on top of structured data (string, graph, etc)

KRLPapers

Must-read papers on knowledge representation learning (KRL) / knowledge embedding (KE)

clip-as-service

🏄 Scalable embedding, reasoning, ranking for images and sentences with CLIP

duc_preprocess

Library for pre-processing DUC summarization data.

DiverstiyBasedAttentionMechanism

diversity_based_attention

ACL paper code