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Kleinman Lab (fungenomics)

Kleinman Lab

fungenomics

Geek Repo

Analysis, tools, and software for functional genomics to understand cancer and brain development

Location:McGill University

Home Page:http://functionalgenomics.ca

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Kleinman Lab's repositories

HGG-oncohistones

Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)

Language:HTMLLicense:GPL-3.0Stargazers:5Issues:2Issues:2

cytobox

A toolbox for analysis and highly-customizable visualization of single cell data

Language:RLicense:GPL-3.0Stargazers:4Issues:2Issues:3

scCoAnnotate

Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.

Language:RLicense:Apache-2.0Stargazers:4Issues:0Issues:0

braindex

A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem

Language:RLicense:GPL-3.0Stargazers:0Issues:4Issues:54

chromswitch

An R/Bioconductor package for detecting chromatin state switches

Language:RLicense:NOASSERTIONStargazers:0Issues:1Issues:0

chromswitch-analysis

Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)

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G34-gliomas

Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)

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Parameterized_report

Parameterized report and interactive plot introduction and demo

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sandbox

A sandbox to test our workflow

Language:RLicense:GPL-3.0Stargazers:0Issues:6Issues:19