definition of some parameters when simulate SV
charliechen912ilovbash opened this issue · comments
Hi,
I have few questions about simulating SV that I couldn't find any answers in the tutorial:
- what does
homozygous_ratio
means inparameter_file
forsimSV
- what does
SNP mutations frequency
means insimSV
- what does
scanreads
do and what is the meaning oferror profile file
insimreads
For example, does any nanopore reads from normal human is appropriate as the input ofscanreads
?
Thank you very much
- Rate of het vs hom Snv
- Frequency of random Snv mutations
- Scan reads can measure error and size distribution that then can be used for simulating long reads
Hope that helps
Fritz
Thanks for the quick reply!