vcftobed conversion

[priya_arasu]

Hello

To get the correct coordinates in the bed file, what is the minimum and maximum size to be specified in the code. The vcf dataset has structural variants, each spanning several base pairs.

./SURVIVOR vcftobed file _"/cohorts/bipolar_rerun_secondcleanup/pbsv/rerun_secondcleanup.GRCh38.pbsv.bed2.vcf" "/cohorts/rerun_secondcleanup/pbsv/GRCh38.pbsv.vcf.bed"

Thank you