Include other metrics in the vcf output

Question

Include other metrics in the vcf output

raonyguimaraes opened this issue 4 years ago · comments

Hi there,

I'm looking for a way to include the "cluster separation" [0-1] metric to the output vcf produced using the gtc2vcf method. Could someone please tell me if this would be possible and how I could change the code to achieve this goal?

Thank you!

Giulio Genovese · Answer 1 · Fri Apr 03 2020 05:23:30 GMT+0800 (China Standard Time)

Yes, I will include in the VCF file additional metrics from the EGT file if that is useful to you. I will get back to you soon.

Raony Guimaraes · Answer 2 · Fri Apr 03 2020 06:12:49 GMT+0800 (China Standard Time)

Thank you Giulio!

Giulio Genovese · Answer 3 · Mon Apr 06 2020 06:27:28 GMT+0800 (China Standard Time)

The latest version now includes the following INFO fields in the VCF when an EGT file is included:

GenTrain_Score
Orig_Score
Edited
Cluster_Sep
Intensity_Threshold

Raony Guimaraes · Answer 4 · Mon Apr 06 2020 14:39:53 GMT+0800 (China Standard Time)

Thank you!