frahik / BMTME

Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]

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Install BMTME

volpatoo opened this issue · comments

Is this package is able to install in Windows 10?
Because I am trying install and a failure occurs.

Thanks!

I can reproduce your situation, but unfortunately can't think of a solution.

devtools::install_github('frahik/BMTME')
Downloading GitHub repo frahik/BMTME@master
from URL https://api.github.com/repos/frahik/BMTME/zipball/master
Installing BMTME
"C:/PROGRA~1/R/R-35~1.1/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  "C:/Users/user457/AppData/Local/Temp/RtmpOYfnbl/devtools216067842666/frahik-BMTME-54bce51"  \
  --library="C:/Users/user457/Documents/R/win-library/3.5" --install-tests 

* installing *source* package 'BMTME' ...
** libs

*** arch - i386
make: Nothing to be done for `all'.
installing to C:/Users/user457/Documents/R/win-library/3.5/BMTME/libs/i386

*** arch - x64
make: Nothing to be done for `all'.
installing to C:/Users/user457/Documents/R/win-library/3.5/BMTME/libs/x64
** R
** data
*** moving datasets to lazyload DB
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BMTME'
    finding HTML links ... done
    BME                                     html  
    BMTME                                   html  
    BMTMERS                                 html  
    BMTMERS_Env                             html  
    CV.KFold                                html  
    CV.RandomPart                           html  
    CV.Stratified                           html  
    CV.StratifiedByFrac                     html  
    MaizeToy                                html  
    WheatIranianToy                         html  
    WheatJapa30                             html  
    WheatJapa50                             html  
    WheatMadaToy                            html  
    WheatToy                                html  
    barplot.BMTMERSENV                      html  
    boxplot.BMECV                           html  
    boxplot.BMTMECV                         html  
    boxplot.BMTMERSCV                       html  
    cholesky                                html  
    detectCores                             html  
    plot.BME                                html  
    plot.BMTME                              html  
    plot.BMTMERSCV                          html  
    print.BME                               html  
    print.BMECV                             html  
    print.BMTME                             html  
    print.BMTMECV                           html  
    print.BMTMERSCV                         html  
    print.BMTMERSENV                        html  
    residuals.BME                           html  
    residuals.BMTME                         html  
    summary.BMECV                           html  
    summary.BMTMECV                         html  
    summary.BMTMERSCV                       html  
    summary.BMTMERSENV                      html  
** building package indices
** testing if installed package can be loaded
*** arch - i386
Error: package or namespace load failed for 'BMTME' in inDL(x, as.logical(local), as.logical(now), ...):
 unable to load shared object 'C:/Users/user457/Documents/R/win-library/3.5/BMTME/libs/i386/BMTME.dll':
  LoadLibrary failure:  %1 is not a valid Win32 application.

Error: loading failed
Execution halted
*** arch - x64
ERROR: loading failed for 'i386'
* removing 'C:/Users/user457/Documents/R/win-library/3.5/BMTME'
In R CMD INSTALL
Installation failed: Command failed (1)

I also have the same issue on Mac OSX :

devtools::install_github('frahik/BMTME')
* installing *source* package ‘BMTME’ ...
** libs
make: Nothing to be done for `all'.
installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME/libs
** R
** data
*** moving datasets to lazyload DB
** tests
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error: package or namespace load failed for ‘BMTME’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME/libs/BMTME.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME/libs/BMTME.so, 6): no suitable image found.  Did find:
	/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME/libs/BMTME.so: unknown file type, first eight bytes: 0x7F 0x45 0x4C 0x46 0x02 0x01 0x01 0x03
	/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME/libs/BMTME.so: unknown file type, first eight bytes: 0x7F 0x45 0x4C 0x46 0x02 0x01 0x01 0x03
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME’
Installation failed: Command failed (1)

Thanks for the report, I'll be looking for the problem and I'll let you know as soon as I have the solution.

Try again, I already solved the detail at least with the windows operating system, I hope it will also be solved for MAC OS.

Nope, no luck on Mac OS yet. Same error.

devtools::install_github('frahik/BMTME')
Downloading GitHub repo frahik/BMTME@master
from URL https://api.github.com/repos/frahik/BMTME/zipball/master
Installing BMTME
'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file  \
  --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  '/private/var/folders/_4/n0yjps8x5dv1qdkn7s2t2zr40000gn/T/Rtmp0FHUVJ/devtools5a89432df9d/frahik-BMTME-fdf5c78'  \
  --library='/Library/Frameworks/R.framework/Versions/3.4/Resources/library'  \
  --install-tests 

* installing *source* package ‘BMTME’ ...
** libs
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang: error: unsupported option '-fopenmp'
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘BMTME’
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BMTME’
Installation failed: Command failed (1)

It's a different error, I will try to solve in the next version of the package. Greetings

No problem. I’m in no hurry.

fixed issue with MAC OS installation