ForrestCKoch

DataTypes

A little library of data structures I've written for practice

DTIpipe

My personal DTI processing scripts

psychoblocks

PychoPy implementation of n-back, and facename fMRI tasks

scRNA-Dimensionality-Reduction

A comparison of dimensionality reduction methods in scRNA data

CA_SARS-CoV-2_models

CIDR

Clustering through Imputation and Dimensionality Reduction

ClusterPoolSH

Bash script for managing multiple compute pools drawing from the same queue. Designed for use on several nodes with a common filesystem.

DCDF

MAPnet

Predict age from MRI data alone

forrestckoch.github.io

mitml

Tools for multiple imputation in multilevel modeling

ModuleSort

Framework for combining Merge-Sort with modular data types and sorting algos

mpru-covid-cancer-project-part2

mrtrix3

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

PSD

pt-sdae

PyTorch implementation of SDAE (Stacked Denoising AutoEncoder)

SAUCIE

scikit-learn

scikit-learn: machine learning in Python

scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group

stan-presentation

tga

Implementation of Trimmed Grassmann Average (TGA) by Hauberg S et al. in Python

ttestvwilcox

VASC

Variational autoencoder for single cell RNA-seq datasets

VPAC

VPAC: Variational projection for accurate clustering of single-cell transcriptomic data