Artem Ilin's repositories
TE_venns
A Shiny app showing active TE insertions shared between 3 Drosophila tissues (1 tissue was treated).
Piccolo
A little script that looks for piRNA clusters based on small RNA library coverage
SuRoQ
A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.
te_motif
Shiny app for screening for core promoter occurrences close to expressed transposons TSSs.
TE_profiles
A Shiny app for plotting bedgraphs on short sequences.
PaintSHOP_DNA_QC
R script for assessing the DNA probes made in PaintSHOP (for Drosophila melanogaster)
test_pdf
Test pdfs for working with LLMs
Elys_embryos_2022
Collection of scripts used for the research of Elys protein in Drosophila melanogaster
Elys
work with nucleoporins and lamins in drosophila testes
Lam_Sperm
Collection of R scripts used to analyze bioinformatic data for 'Changes in genome architecture at two consecutive stages of Drosophila spermatogenesis' by Artem A. Ilyin
dm3
R package containing basic functions and data related to dm3 r5.57 release of Drosophila melanogaster genome
Brains.DamID
Scripts for processing DamID-seq and Microarray data in drosophila brains and Kc167 cells
piPipes
piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
Datasets
Includes sample datasets for machine learning
RDML.qPCR
obtaining data from BioRad qPCR machine
DamID.bins
Scripts for DamID-seq processing
damid.to.genes
Script to assign results from DamID experiment to genes from flybase
R-counts
script who count statistic by data from DamID script
deepTools
Tools to process and analyze deep sequencing data.
damidseq_pipeline
An automated pipeline for processing DamID sequencing datasets