Applying LIS to RFDiffusion Binder Design Filtering
amelie-iska opened this issue · comments
Hi! Thanks for the awesome work. I just thought it might be a good idea to update the pAE method for filtering protein binders designed by RFDiffusion to use the LIS score. For more info, see this issue in the RFDiffusion GitHub:
RosettaCommons/RFdiffusion#211
I'm happy to help out a little and discuss.
Hi! I am thinking applying LIS to filter my deigned binders. After dl_binder_design/mpnn_fr/dl_interface_design.py
, I get a set of .pdb
files. However, I find I also need .json
files in AFM-LIS.
Could I ask how to calculate LIS and LIA only with .pdb
files?