Florent Lassalle's repositories
pantagruel
a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
genomescans
R module and script for the analysis of aligned biological sequences, mainly to perform genome-wide scan for the detection of hotspots of diversity, LD, etc.
FwdTreeSim
Python module for simulation of forward evolution of a prokaryotic(-like) pangenome
agrogenom
Python modules and scripts for the construction of Agrogenom database
bioinfo-training-material
some material for bioinfromatics training
cpAAI_Rhizobiaceae
pipeline and reference protein sequence data for generating core-proteome alignment of Rhizobiaceae genomes
microbiomes
suite of scripts and modules for parsing output from metagenomic classification softwares, including Krona graphs
script_utils
miscellaneous bioinformatics scripts
yemenpaper
Supporting data and scripts for paper on the Yemen cholera outbreak in 2018-2019