flashton2003 / poretools

a toolkit for working with Oxford nanopore data

poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore.

Nick Loman and Aaron Quinlan

Note: this software is in an alpha state; the code is changing rapidly and the API and CLI may change at any time.

Complete installation instructions and usage examples can be found on the poretools documentation site.

Requirements

• HDF5 >= 1.8.7 (http://www.hdfgroup.org/HDF5/)
• R >= 3.0.0
• Python >= 2.7
• rpy2 >= 2.4.2
• h5py >= 2.0