Auc_empirical

Question

Auc_empirical

Edison2021 opened this issue 3 years ago · comments

Edison2021 commented 3 years ago

Hi Firas
Thanks for your software that makes PM analysis easier. I wonder if AMiGA can give empirical AUC?

Best
Edison

Firas Midani · Answer 1 · Fri Jul 16 2021 04:18:26 GMT+0800 (China Standard Time)

The fit function estimates the AUC after modelling a growth curve with Gaussian Process. However, neither the summarize or fit function computes the empirical AUC, i.e. before modelling a growth curve. Still, it should be an easy feature to add to the software and I will try to include it in the next update.

Edison2021 · Answer 2 · Fri Jul 16 2021 05:26:43 GMT+0800 (China Standard Time)

Thanks, hopefully it is coming soon!

Best
Edison

Firas Midani · Answer 3 · Tue Oct 19 2021 00:34:01 GMT+0800 (China Standard Time)

The summarize function will now automatically compute the empirical AUC. See column OD_Emp_AUC in the summary results table. The empirical AUC is computed without any modifications to the growth curve. If there are any issues with this new feature, please open a new issue. Thank you!

Edison2021 · Answer 4 · Tue Oct 19 2021 03:45:12 GMT+0800 (China Standard Time)

Hi Firas
Thanks for the updates. Do I need to reinstall amiga for the function?

Best
Edison

Firas Midani · Answer 5 · Tue Oct 19 2021 04:03:22 GMT+0800 (China Standard Time)

Yes. If you installed with git, you can simply git pull. Otherwise, please re-download amiga and simply replace your old amiga folder with the new one.